| The current documentation for X! TANDEM is in the form of a set of UML diagrams
			illustrating how the various algorithms in X! TANDEM work in detail. For all other
			details, please see the documentation in the source code. 
 A state diagram showing how X! TANDEM works. 
 An activity diagram of the how information is loaded.
 An activity diagram of how scoring is done.
 A state diagram of the scoring mechanism.
 A state diagram of how peptide sequences are created from protein sequences.
 A state diagram of how protein sequences are loaded from a file.
 A state diagram of how spectra are evaluated by peptide mass.
 A class diagram of the loadmspectrum class.
 A class diagram of the mprocess class.
 A class diagram of the mreport class.
 A class diagram of the mscore class.
 A class diagram of the msequence class.
 A class diagram of the mspectrum class.
 Is there something you would like to see included, or documentation that you would like
to contribute? Please let use know - api@thegpm.org. 
 X! TANDEM API description project
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